Index

_

__getitem__() (caspo.core.logicalnetwork.LogicalNetworkList method) (caspo.core.mapping.MappingList method) __iter__() (caspo.core.logicalnetwork.LogicalNetworkList method) (caspo.core.mapping.MappingList method) __len__() (caspo.core.logicalnetwork.LogicalNetworkList method) (caspo.core.mapping.MappingList method) (caspo.core.setup.Setup method)

__plot__() (caspo.core.graph.Graph method) (caspo.core.logicalnetwork.LogicalNetwork method) (caspo.core.logicalnetwork.LogicalNetworkList method) __str__() (caspo.core.clause.Clause method) (caspo.core.literal.Literal method) (caspo.core.mapping.Mapping method)

A

add_network() (caspo.core.logicalnetwork.LogicalNetworkList method)

append() (caspo.core.logicalnetwork.LogicalNetworkList method)

B

behaviors_distribution() (in module caspo.visualize)

bool() (caspo.core.clamping.Clamping method) (caspo.core.clause.Clause method)

C

candidates (caspo.design.Designer attribute) caspo.classify (module) caspo.control (module) caspo.core.clamping (module) caspo.core.clause (module) caspo.core.dataset (module) caspo.core.graph (module) caspo.core.hypergraph (module) caspo.core.literal (module) caspo.core.logicalnetwork (module) caspo.core.mapping (module) caspo.core.setup (module) caspo.design (module) caspo.learn (module) caspo.predict (module) caspo.visualize (module) ceil() (caspo.learn.Learner method) Clamping (class in caspo.core.clamping)

ClampingList (class in caspo.core.clamping) clampings (caspo.core.dataset.Dataset attribute) clampings_iter() (caspo.core.setup.Setup method) Classifier (class in caspo.classify) classify() (caspo.classify.Classifier method) clause (caspo.core.mapping.Mapping attribute) Clause (class in caspo.core.clause) clauses (caspo.core.hypergraph.HyperGraph attribute) clauses_idx (caspo.core.hypergraph.HyperGraph attribute) coloured_network() (in module caspo.visualize) combinatorics() (caspo.core.clamping.ClampingList method) (caspo.core.logicalnetwork.LogicalNetworkList method) compress() (caspo.core.graph.Graph method) concat() (caspo.core.logicalnetwork.LogicalNetworkList method) constraints (caspo.control.ScenarioList attribute) control() (caspo.control.Controller method) Controller (class in caspo.control) cues() (caspo.core.setup.Setup method)

D

dataset (caspo.learn.Learner attribute) Dataset (class in caspo.core.dataset) design() (caspo.design.Designer method) Designer (class in caspo.design) designs (caspo.design.Designer attribute)

differences() (caspo.core.clamping.ClampingList method) differences_distribution() (in module caspo.visualize) discrete (caspo.learn.Learner attribute) drop_literals() (caspo.core.clamping.Clamping method) (caspo.core.clamping.ClampingList method)

E

edges (caspo.core.hypergraph.HyperGraph attribute) encodings (caspo.control.Controller attribute) (caspo.design.Designer attribute) (caspo.learn.Learner attribute)

experimental_designs() (in module caspo.visualize)

F

factor (caspo.learn.Learner attribute) filter() (caspo.core.setup.Setup method) fixpoint() (caspo.core.logicalnetwork.LogicalNetwork method) floor() (caspo.learn.Learner method) formulas_iter() (caspo.core.logicalnetwork.LogicalNetwork method) frequencies_iter() (caspo.core.clamping.ClampingList method) (caspo.core.logicalnetwork.LogicalNetworkList method) frequency() (caspo.core.clamping.ClampingList method) (caspo.core.logicalnetwork.LogicalNetworkList method) from_csv() (caspo.core.clamping.ClampingList class method) (caspo.core.logicalnetwork.LogicalNetworkList class method)

from_dataframe() (caspo.core.clamping.ClampingList class method) from_graph() (caspo.core.hypergraph.HyperGraph class method) from_hypergraph() (caspo.core.logicalnetwork.LogicalNetworkList class method) from_hypertuples() (caspo.core.logicalnetwork.LogicalNetwork class method) from_json() (caspo.core.setup.Setup class method) from_str() (caspo.core.clause.Clause class method) (caspo.core.literal.Literal class method) (caspo.core.mapping.Mapping class method) from_tuples() (caspo.core.clamping.Clamping class method) (caspo.core.graph.Graph class method)

G

goals (caspo.control.ScenarioList attribute) graph (caspo.learn.Learner attribute)

Graph (class in caspo.core.graph)

H

has_variable() (caspo.core.clamping.Clamping method) hyper (caspo.core.hypergraph.HyperGraph attribute)

hypergraph (caspo.learn.Learner attribute) HyperGraph (class in caspo.core.hypergraph)

I

inhibitors (caspo.core.setup.Setup attribute) instance (caspo.control.Controller attribute) (caspo.design.Designer attribute) (caspo.learn.Learner attribute) intervention_strategies() (in module caspo.visualize) interventions_frequency() (in module caspo.visualize)

is_inhibitor() (caspo.core.dataset.Dataset method) is_readout() (caspo.core.dataset.Dataset method) is_stimulus() (caspo.core.dataset.Dataset method) iteritems() (caspo.core.mapping.MappingList method)

L

learn() (caspo.learn.Learner method) Learner (class in caspo.learn) length (caspo.learn.Learner attribute)

Literal (class in caspo.core.literal) LogicalNetwork (class in caspo.core.logicalnetwork) LogicalNetworkList (class in caspo.core.logicalnetwork)

M

Mapping (class in caspo.core.mapping) MappingList (class in caspo.core.mapping)

mappings (caspo.core.hypergraph.HyperGraph attribute) (caspo.core.logicalnetwork.LogicalNetworkList attribute) mappings_frequency() (in module caspo.visualize)

N

networks (caspo.classify.Classifier attribute) (caspo.control.Controller attribute) (caspo.core.logicalnetwork.LogicalNetwork attribute) (caspo.design.Designer attribute) (caspo.learn.Learner attribute) (caspo.predict.Predictor attribute) networks_distribution() (in module caspo.visualize)

nodes (caspo.core.hypergraph.HyperGraph attribute) (caspo.core.setup.Setup attribute)

O

optimum (caspo.learn.Learner attribute)

P

predecessors() (caspo.core.graph.Graph method) predict() (caspo.predict.Predictor method) predictions() (caspo.core.logicalnetwork.LogicalNetwork method) (caspo.core.logicalnetwork.LogicalNetworkList method)

predictions_variance() (in module caspo.visualize) Predictor (class in caspo.predict)

R

random() (caspo.learn.Learner method) read_sif() (caspo.core.graph.Graph class method) readouts (caspo.core.dataset.Dataset attribute) (caspo.core.setup.Setup attribute)

reset() (caspo.core.logicalnetwork.LogicalNetworkList method) round() (caspo.learn.Learner method)

S

ScenarioList (class in caspo.control) scenarios (caspo.control.Controller attribute) setup (caspo.classify.Classifier attribute) (caspo.core.dataset.Dataset attribute) (caspo.design.Designer attribute) (caspo.predict.Predictor attribute) Setup (class in caspo.core.setup) signature (caspo.core.literal.Literal attribute) size (caspo.core.logicalnetwork.LogicalNetwork attribute)

split() (caspo.core.logicalnetwork.LogicalNetworkList method) stats (caspo.classify.Classifier attribute) (caspo.control.Controller attribute) (caspo.design.Designer attribute) (caspo.learn.Learner attribute) step() (caspo.core.logicalnetwork.LogicalNetwork method) stimuli (caspo.core.setup.Setup attribute) strategies (caspo.control.Controller attribute) successors() (caspo.core.graph.Graph method)

T

target (caspo.core.mapping.Mapping attribute) to_array() (caspo.core.clamping.Clamping method) (caspo.core.logicalnetwork.LogicalNetwork method) to_csv() (caspo.core.clamping.ClampingList method) (caspo.core.logicalnetwork.LogicalNetworkList method) to_dataframe() (caspo.core.clamping.ClampingList method) (caspo.core.logicalnetwork.LogicalNetworkList method)

to_funset() (caspo.control.ScenarioList method) (caspo.core.clamping.Clamping method) (caspo.core.clamping.ClampingList method) (caspo.core.dataset.Dataset method) (caspo.core.hypergraph.HyperGraph method) (caspo.core.logicalnetwork.LogicalNetworkList method) (caspo.core.setup.Setup method) to_graph() (caspo.core.logicalnetwork.LogicalNetwork method) to_json() (caspo.core.setup.Setup method)

V

variable (caspo.core.literal.Literal attribute) variable() (caspo.core.hypergraph.HyperGraph method)

variables() (caspo.core.logicalnetwork.LogicalNetwork method)

W

weighted_mse() (caspo.core.logicalnetwork.LogicalNetworkList method)